Preprints and Manuscripts

1. Wang, X., Nan, N., & Wang, K. (2026). EVTS: A Topology-Aware Metric for Evaluating RNA Velocity Embedding Faithfulness. Submitted to the International Conference on Intelligent Biology and Medicine (ICIBM 2026).

   BIB

   @unpublished{wang2026evts,
     author = {Wang, Xiuquan and Nan, Nan and Wang, Kai},
     title = {{EVTS}: A Topology-Aware Metric for Evaluating {RNA} Velocity Embedding Faithfulness},
     year = {2026},
     note = {Submitted to the International Conference on Intelligent Biology and Medicine (ICIBM 2026)}
   }
   

Peer-Reviewed Journal Articles

1. Chism, C. M., Sepehri, B., Guerin, N., Heintz, R., Hamadani, C. M., Hoang, A., Shami, A. A., Vanlandingham, M. B., Dasanayake, G., Jarrett, E., Misra, S. K., Doerksen, R. J., Sharp, J. S., Wang, X., & Tanner, E. E. L. (2025). Comprehensive Evaluation of Human and Murine Protein Coronae Formed on Choline Carboxylic Acid Ionic Liquid-Modified PLGA Nanoparticles. Bioconjugate Chemistry, 36(12), 2569–2588.

   DOI BIB

   @article{chism2025protein,
     author = {Chism, Claylee M. and Sepehri, Bakhtyar and Guerin, Nicole and Heintz, Rebekah and Hamadani, Christine M. and Hoang, Anh and Shami, Anter A. and Vanlandingham, Mary Beth and Dasanayake, Gaya and Jarrett, Ethan and Misra, Sandeep K. and Doerksen, Robert J. and Sharp, Joshua S. and Wang, Xiuquan and Tanner, Eden E. L.},
     title = {Comprehensive Evaluation of Human and Murine Protein Coronae Formed on Choline Carboxylic Acid Ionic Liquid-Modified {PLGA} Nanoparticles},
     journal = {Bioconjugate Chemistry},
     volume = {36},
     number = {12},
     pages = {2569--2588},
     year = {2025},
     doi = {10.1021/acs.bioconjchem.5c00347}
   }
   

2. Wang, X., Ahsan, M. U., Zhou, Y., & Wang, K. (2023). Transformer-Based DNA Methylation Detection on Ionic Signals from Oxford Nanopore Sequencing Data. Quantitative Biology, 11(3), 287–296.

   DOI BIB

   @article{wang2023transformer,
     author = {Wang, Xiuquan and Ahsan, Mian Umair and Zhou, Yunyun and Wang, Kai},
     title = {Transformer-Based {DNA} Methylation Detection on Ionic Signals from Oxford Nanopore Sequencing Data},
     journal = {Quantitative Biology},
     volume = {11},
     number = {3},
     pages = {287--296},
     year = {2023},
     doi = {10.15302/J-QB-022-0323}
   }
   

3. Wang, J., Wang, X., Bhat, A., Chen, Y., Xu, K., Mo, Y.-yuan, Yi, S. S., & Zhou, Y. (2020). Comprehensive Network Analysis Reveals Alternative Splicing-Related lncRNAs in Hepatocellular Carcinoma. Frontiers in Genetics, 11, 659.

   DOI BIB

   @article{wang2020network,
     author = {Wang, Junqing and Wang, Xiuquan and Bhat, Akshay and Chen, Yixin and Xu, Keli and Mo, Yin-yuan and Yi, Song Stephen and Zhou, Yunyun},
     title = {Comprehensive Network Analysis Reveals Alternative Splicing-Related {lncRNAs} in Hepatocellular Carcinoma},
     journal = {Frontiers in Genetics},
     volume = {11},
     pages = {659},
     year = {2020},
     doi = {10.3389/fgene.2020.00659}
   }
   

4. Wang, X., Xu, K., Wang, J., & Zhou, Y. (2020). LCLE: A Web Portal for lncRNA Network Analysis in Liver Cancer. International Journal of Computational Biology and Drug Design, 13(5/6), 482–495.

   DOI BIB

   @article{wang2020lcle,
     author = {Wang, Xiuquan and Xu, Keli and Wang, Junqing and Zhou, Yunyun},
     title = {{LCLE}: A Web Portal for {lncRNA} Network Analysis in Liver Cancer},
     journal = {International Journal of Computational Biology and Drug Design},
     volume = {13},
     number = {5/6},
     pages = {482--495},
     year = {2020},
     doi = {10.1504/IJCBDD.2020.113855}
   }
   

5. Xu, D., Reeve, J. D., Wang, X., & Xiao, M. (2010). Developmental Variability and Stability in Continuous-Time Host–Parasitoid Models. Theoretical Population Biology, 78(1), 1–11.

   DOI BIB

   @article{xu2010developmental,
     author = {Xu, Dashun and Reeve, John D. and Wang, Xiuquan and Xiao, Mingqing},
     title = {Developmental Variability and Stability in Continuous-Time Host--Parasitoid Models},
     journal = {Theoretical Population Biology},
     volume = {78},
     number = {1},
     pages = {1--11},
     year = {2010},
     doi = {10.1016/j.tpb.2010.03.007}
   }
   

Peer-Reviewed Conference Papers